|
1.INTRODUCTIONPhenylalanine(Phe) is one of the important components of proteins such as organisms, and the molecular characteristics of Phe molecular system are widely concerned. Reference [1] drew a complete reaction potential energy surface for chiral transition path of Phe molecule by finding structures of the extreme value points including the transition states and intermediates. Reference [2] study reports a theoretical study of the mechanism of Phe molecular chiral transition under the action of a single water molecule. Reference [3] drew a reaction potential energy surface for chiral transition path by finding the structures of extreme value points including the transition states and intermediates, and analyzed the geometric and electronic structure properties of extreme value points for Phe. Implicit expression H2O solvent S-Phe molecular system(S-Phe-1) electron-hole diagram analysis is not reported, for this reason, the excited state wave function of S-Phe-1 and the electron-hole diagram analysis of three different group levels, so as to reveal the electronic structure characteristics of S-Phe-1. 2.THEORY AND COMPUTATIONAL METHODSThe electron excitation process is usually accompanied by the transfer of the electron distribution range, and the electron transition process of a certain system is quantitatively described by theoretical calculations. The electron-hole module of the Multiwfn [4] is super powerful, not only can give electron and hole distribution, but also can do a lot of analysis to help judge the degree of CT, such as the distance between electron and hole centroid, electron and hole overlap integral, draw density difference (namely electron distribution minus hole distribution), the electron and hole into easier to investigate smooth distribution form, track or fragment contribution to electron and hole, etc. This work used the density functional(DFT) B3LYP method to optimize the S-Phe-1 geometry at the 6-31G(d) base group level; using PBE0 [5] method based on the TDDFT electron excitation calculation of 6-311G(d) and defTZVP with gradually enhanced polarization function, the excited state wave function of the S-Phe-1 is calculated, and is studied by graphically identifying the electron transition region Electron-excitation properties of the S-Phe-1. Calculated in Gaussian 16 [6], all graphics processing, wave function analysis by program Multiwfn_3.7(dev) [4,7-11] accomplish. 3.RESULTS AND DISCUSSION3.1Ground state configuration of S-Phe-1S-Phe-1[1] as shown in figure 1, based on the implicit for the electron-hole analysis the properties of the excited states of the S-Phe-1 are analyzed theoretically. 3.2Electron-hole diagram analysis of the electron excitation properties of the S-Phe-1Based on PBE0 method, 6-311G(d) and defTZVP with polarization function, electron-hole analysis of each excited electron excitation of ground states S0 to S1-S7 in the S-Phe-1. Based on the electron-hole analysis of Multiwfn program, the corresponding distribution map of electron and hole is presented, and is studied by graphically identifying the electron transition region electron-excitation properties of the S-Phe-1. 3.2.1.Graphram analysis of electron excitation properties of S-Phe-1 at PBE0/6-311G(d) level.Assist in determining the degree of charge transfer (CT) based on electron and hole analysis. The level of PBE0/6-311g(d) is shown by the electron and mole diagram electron-excitation properties of the S-Phe-1. Discuss the excited state of S1, visualize the simultaneous distribution of hole, electron, electron and hold respectively. Investigate the simultaneous distribution of electron and hole, and use green and blue isosurfaces respectively (ρ=0.003a.u.) representation, as shown in figures 2,3,4. The hole is mostly in the phenyl region, very few in the carboxyl region, while electron is mostly in the phenyl region, and a few on the amino, chiral C3 atoms. It can be known that after the electron transition, there will be a little electron flow from the phenyl and carboxyl region to amino and chiral C3 atoms, with a little CT feature, but the LE feature is more important, so it is suitable to belong to LE excitation, that is, local excitation from phenyl to phenyl pi→pi*. To explore the specific excitation mode of each excited state of S2-S7, the following is the isosurface diagram of the simultaneous distribution of electron and hole of each excited state, as shown in figures 5,6,7. In the same way, S2 excited from charge transfer from amino to phenyl and phenyl carboxy n→pi*, S3 excited from carboxy to carboxy n→pi*, S4 excited from amino, carboxyl to phenyl and carboxy n→pi*, S5 excited from charge transfer from amino to phenyl n→pi*, S6 excited from amino to phenyl and carboxy n→pi*, and S7 excited from charge transfer from phenyl to carboxy pi→pi*. 3.2.2.At the PBE0/defTZVP level Graphram analysis of the electron excitation properties of S-Phe-1.Plot shown by electron and hole analysis at the PBE0/defTZVP level electron-excitation properties of the S-Phe-1. Discuss the S4 excited state situation (ρ=0.009a.u.), as shown in figures 8,9,10. According to the figure, hold appears mostly in the amino and carboxyl regions, and very few in the phenyl region, while electron appears mostly in the carboxyl region and a small part in the phenyl region. It can be known that after the electron transition, some electron will flow from amino and carboxyl region to phenyl, with a little CT feature, but the LE feature is more important, so it is suitable to belong to LE excitation, that is, local excitation from amino, carboxy to carboxy n→pi*. To explore the specific excitation mode of each excited state of S1-3 and S5-7, the following is the isosurface diagram of electron and hole simultaneous distribution of each excited state, as shown in figures 11,12,13. In the same way, S1 excited from localized excitation from phenyl to phenyl pi→pi*; S2 excited from amino to carboxy n→pi*, S3 excited from carboxy to carboxy n→pi*, S5 excited from amino to phenyl n→pi*, S6 excited from amino to phenyl and carboxy n→pi*, and S7 excited from amino to carboxy n→pi*. 4.CONCLUSIONBy examining the excited state characteristics of S-Phe-1 of 6-311G(d) and defTZVP with polarization function, judging the excited state electron excitation characteristics of S1-S7 by using electron-hole diagram analysis method, summarizing: it is displayed in S-hole figure by electron and Phe-H2O molecular system, the two groups show that the excited state of S1-S6, the analysis results are basically the same; S7, the 6-311G(d) group with polarization function is different from defTZVP groups, the former refers to the charge transfer excitation from phenyl to carboxy pi→pi*; the latter is the local excitation from amino to carboxy n→pi*. REFERENCESZhu Ying, Lin Ruizhu, Sun Baishun, et al.,
“Chiral Transformation Mechanism of PhenylAlanine under the Condition of Mono-H2O Compound by Density Functional Theory[J],”
Journal of Inner Mongolia Normal University (Natural Science Edition), 46
(6), 818
–821
(2017). Google Scholar
Zhu Ying, Chen Hongbin,
“Chiral Transition Mechanism of Phenylalanine in BNNT[J],”
Journal of Inner Mongolia Normal University (Natural Science Edition), 58
(1), 151
–157
(2020). Google Scholar
Zhu Ying, Cao Dianjun, Chen Hongbin, Chiral Transition Mechanism of Phenylalanine, Google Scholar
“Moleculein Situation of Dual-Water[J],”
Journal of Inner Mongolia Normal University (Natural Science Edition), 56
(2), 426
–431
(2018). Google Scholar
Tian Lu, Feiwu Chen,
“Multiwfn: A multifunctional wavefunction analyzer[J],”
Journal of Computational Chemistry, 33
(5), 580
–592
(2012) http://Multiwfn.codeplex.com Google Scholar
C. Adamo, V. Barone,
“Toward Reliable Density Functional Methods Without Adjustable Parameters: The PBE0 Model,”
J. Chem. Phys., 110 6158
(1999). https://doi.org/10.1063/1.478522 Google Scholar
M. J. Frisch, G. W. Trucks, H. B. Schlegel, et al., Gaussian 16, Revision A.03, Gaussian, Inc., Wallingford CT, Pittsburgh, PA
(2016). Google Scholar
Tian Lu, Feiwu Chen,
“Quantitative analysis of molecular surface based on improved Marching Tetrahedra algorithm[J],”
Journal of Molecular Graphics and Modelling, 38 314
–323
(2012). https://doi.org/10.1016/j.jmgm.2012.07.004 Google Scholar
Meng Xiao, Tian Lu,
“Generalized Charge Decomposition Analysis(GCDA) Method,”
Journal of Advances in Physical Chemistry, 4
(4), 111
–124
(2015). https://doi.org/10.12677/JAPC.2015.44013 Google Scholar
Tian Lu, Feiwu Chen,
“Calculation of Molecular Orbital Composition[J],”
Acta Chimica Sinica, 69
(20), 2393
–2406
(2011). Google Scholar
Tian Lu, Multiwfn Manual, version 3.7(dev), Section 3.21.1,
(2020) http://sobereva.com/multiwfn Google Scholar
|